◈ Skill RegistryExplore skills
← Back to search
domains · Found in 2 repositories

contamination-detection

Detect contamination and assess genome quality using CheckM, CheckM2, GTDB-Tk, and GUNC for metagenome-assembled genomes and isolate assemblies. Use when checking assemblies for contamination.

View source: mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- ↗

Install from source

Install using Skill Manager:

sk install https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/tree/main/Skills/Genomics/genome-assembly/contamination-detection

Source-path status is inferred from metadata; it does not verify a live download. Scan and quality scores describe registry checks and are not a guarantee of safety.

Attribution and permissions

Check the original repository for permission and license terms before reuse. Registry metadata does not grant a license.

This guide links to the author’s instructions and includes metadata only.

Request removal or correct attribution

Copies with matching content

Exact Markdown body copies across 2 repositories. This count does not identify the original author.

More in domains

ena-databaseAccess European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pgene-databaseQuery NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation agwas-databaseQuery NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epggetCLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4